Center for Eukaryotic Structural Genomics Publications

   | PDF of Publications | Home |     Total:  121 Publications      Last Updated May 5, 2008

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AUTHORS YEAR TITLE JOURNAL/BOOK VOL/ISSUE/PAGES TEAM TYPE PDF CODE PUBMED
Aceti, D.J., Bitto, E., Yakunin, A.F., Proudfoot, M., Bingman, C.A., Frederick, R.O., Sreenath, H.K., Vojtik, F.C., Wrobel, R.L., Fox, B.G., Markley, J.L., and Phillips, G.N., Jr. 2008Structural and functional characterization of a novel phosphatase from the Arabidopsis thaliana gene locus At1g05000Proteins (in press) X-rayStructural 233K 18433060
Aceti, D.J., Blommel, P.G., Endo, Y., Fox, B.G., Frederick, R.O., Hegeman, A.D., Jeon, W.B., Kimball, T.L., Lee, J.M., Newman, C.S., Peterson, F.C., Sawasaki, T., Seder, K.D., Sussman, M.R., Ulrich, E.L., Wrobel, R.L., Thao, S., Vinarov, D.A., Volkman, B.F., and Zhao, Q. 2003Role of nucleic acid and protein manipulation technologies in high-throughput structural biology efforts Biopolymers, Wiley-VCH, Weinheim8:469-96 PPMethod X 1
Allard, S.T.M., Bingman, C.A., Johnson, K.A., Wesenberg, G.E., Bitto, E., Jeon, W.B., and Phillips, G.N., Jr. 2005Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thalianaActa Crystallograph Sect F Struct Biol Cryst Commun 61(Pt 7):647-50X-ray Structural X 1PK16511118
Aranda, R., Worley, C.E., Liu, M., Bitto, E., Cates, M.S., Olson, J.S., Lei, B., and Phillips, G.N., Jr. 2007Bis-methionyl coordination in the crystal structure of the heme-binding domain of the streptococcal cell surface protein Shp J Mol Biol374(2):374-83 X-rayStructural X 232K17920629
Arangarasan, R., and Phillips, G.N., Jr. 2002 Modular approach of multimodal integration in a virtual environment Proceedings of the Fourth IEEE International Conference on Multimodal Interfaces (ICMI '02), IEEE Computer Society X-ray Method X 1K
Bae, E., Bingman, C.A., Bitto, E., Aceti, D.J., and Phillips, G.N., Jr. 2008Crystal structure of Arabidopsis thaliana cytokinin dehydrogenaseProteins 70:303-6X-ray Structural 231K 17886275
Bae, E., Bingman, C.A., Bitto, E., Aceti, D.J., and Phillips, G.N., Jr. 2008Crystal structure of Homo sapiens protein LOC79017Proteins 70(2):588-91X-ray Structural X 231K17932939
Bae, E., Reiter, N.J., Bingman, C.A., Kwan, S.S., Lee, D., Phillips, G.N., Jr., Butcher, S.E., and Brow, D.A. 2007Structure and interactions of the first three RNA recognition motifs of splicing factor prp24 J Mol Biol367(5):1447-58 X-rayStructural X 224K17320109
Bailey, L.J., Elsen, N.L., Pierce, B.S., and Fox, B.G. 2008Soluble expression and purification of the oxidoreductase component of tuluene 4-monooxygenase Prot Expr Purif57(1):9-16 CloningMethod X 233K17964805
Bannen, R.M., Bingman, C.A., and Phillips, G.N., Jr. 2008Effect of low-complexity regions on protein structure determination JSFG8(4):217-26 X-ray MethodX 233K 18302007
Bianchetti, C.M., Yi, L., Ragsdale, S.W., and Phillips, G.N., Jr. 2007Comparison of apo- and heme-bound crystal structures of a truncated human heme oxygenase-2 J Biol Chem282(52):37624-31 X-rayStructural X 231K17965015
Bingman, C.A., Johnson, K.A., Peterson, F.C., Frederick, R.O., Zhao, Q., Thao, S., Fox, B.G., Volkman, B.F., Jeon, W.B., Smith, D.W., Newman, C.S., Ulrich, E.L., Hegeman, A.D., Sussman, M.R., Markley, J.L., and Phillips, G.N., Jr. 2004Crystal structure of the protein from gene At3g17210 of Arabidopsis thalianaProteins 57(1):218-20X-ray Structural X 1K15326607
Bitto, E., Bingman, C.A., Allard, S.T.M., Wesenberg, G.E., Aceti, D.J., Wrobel, R.L., Frederick, R.O., Sreenath, H.K., Vojtik, F.C., Jeon, W.B., Newman, C.S., Primm, J.G., Sussman, M.R., Fox, B.G., Markley, J.L., and Phillips, G.N., Jr. 2005The structure at 2.4 A resolution of the protein from gene locus At3g21360, a putative FeII/2-oxoglutarate-dependent enzyme from Arabidopsis thalianaActa Crystallograph Sect F Struct Biol Cryst Commun 61(Pt 5):469-72X-ray Structural X 1PK16511070
Bitto, E., Bingman, C.A., Allard, S.T.M., Wesenberg, G.E., and Phillips, G.N., Jr. 2005The structure at 1.7 A resolution of the protein product of the At2g17340 gene from Arabidopsis thalianaActa Crystallograph Sect F Struct Biol Cryst Commun 61(Pt 7):630-5X-ray Structural X 1PK16511115
Bitto, E., Bingman, C.A., Kondrashov, D.A., McCoy, J.G., Bannen, R.M., Wesenberg, G.E., and Phillips, G.N., Jr. 2008Structure and dynamics of gamma-SNAP: insight into flexibility of proteins from the SNAP family Proteins70(1):93-104 X-rayStructural X 223K17634982
Bitto, E., Bingman, C.A., McCoy, J.G., Allard, S.T.M., Wesenberg, G.E., and Phillips, G.N., Jr. 2005The structure at 1.6 A resolution of the protein product of the At4g34215 gene from Arabidopsis thalianaActa Crystallogr D Biol Crystallogr 61(Pt 12):1655-61X-rayStructural X 21PK16301800
Bitto, E., Bingman, C.A., Robinson, H., Allard, S.T.M., Wesenberg, G.E., and Phillips, G.N., Jr. 2005The crystal structure at 2.5 A resolution of human basophilic leukemia expressed protein BLES03 Acta Crystallograph Sect F Struct Biol Cryst Commun 61(Pt 9):812-7X-ray Structural X 1K16511166
Bitto, E., Bingman, C.A., Wesenberg, G.E., McCoy, J.G., and Phillips, G.N., Jr. 2006Structure of pyrimidine 5'-nucleotidase type 1: Insight into mechanism of action and inhibition during lead poisoning J Biol Chem281(29):20521-9 X-rayStructural X 21K16672222
Bitto, E., Bingman, C.A., Wesenberg, G.E., McCoy, J.G., and Phillips, G.N., Jr. 2007Structure of aspartoacylase, the brain enzyme impaired in Canavan disease Proc Natl Acad Sci USA 104(2):456-61 X-rayStructural X 222PK17194761
Bitto, E., Huang, Y., Bingman, C.A., Singh, S., Thorson, J.S., and Phillips, G.N., Jr. 2008The structure of flavin-dependent tryptophan 7-halogenase RebH Proteins70(1):289-93 X-rayStructural X 231K17876823
Blommel, P.G., Becker, K.J., Duvnjak, P., and Fox, B.G. 2007Enhanced bacterial protein expression during auto-induction obtained by alteration of lac repressor dosage and medium composition Biotechnol Prog23(3):585-98 CloningMethod X 222K17506520
Blommel, P.G., and Fox, B.G. 2005 Fluorescence anisotropy for proteolysis of specifically labeled fusion proteins Anal Biochem336(1):75-86 CloningMethod X 1K15582561
Blommel, P.G., and Fox, B.G. 2007 A combined approach to improving large-scale production of tobacco etch virus protease Prot Expr Purif55(1P):53-68 CloningMethod X 222K17543538
Blommel, P.G., Martin, P.A., Wrobel, R.L., Steffen, E., and Fox, B.G. 2006High-efficiency single-step production of expression plasmids from cDNA clones using the FlexiVector cloning system Prot Expr Purif47(2):562-70 X-rayMethod X 21K16377204
Blommel, P.G., Smith, D.W., Bingman, C.A., Dyer, D.H., Rayment, I., Holden, H.M., Fox, B.G., and Phillips, G.N., Jr. 2004Crystal structure of gene locus At3g16990 from Arabidopsis thalianaProteins 57(1):221-2X-ray Structural X 1K15326608
Chae, Y.K., Im, H., Zhao, Q., Doelling, J.H., Vierstra, R.D., and Markley, J.L. 2004Prevention of aggregation after refolding by balanced stabilization-destabilization: production of the Arabidopsis thaliana protein APG8a (At4g21980) for NMR structure determination Prot Expr Purif34(2):280-3 NMRStructural X 1K15003262
Chae, Y.K., Lee, K., and Markley, J.L. 2005 1H, 15N, and 13C resonance assignments of a protein involved in the autophagy process, At4g21980.1 from Arabidopsis thalianaJ Biomol NMR 32(4):337NMR Structural X 21K16211491
Cornilescu, C.C., Porter, F.W., Zhao, K.Q., Palmenberg, A.C., and Markley, J.L. 2008NMR structure of the mengovirus Leader protein zinc-finger domain FEBS Lett582(6):896-900 NMRStructural X 233K18291103
Cornilescu, G., Bahrami, A., Tonelli, M., Markley, J.L., and Eghbalnia, H.R. 2007HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections J Biomol NMR38(4):341-51 NMRMethod X 231K17610130
Cornilescu, G., Cornilescu, C.C., Zhao, Q., Frederick, R.O., Peterson, F.C., Thao, S., and Markley, J.L. 2004Solution structure of a homodimeric hypothetical protein, At5g22580, a structural genomics target from Arabidopsis thalianaJ Biomol NMR 29(3):387-90NMR Structural X 1K15213437
Cornilescu, G., Hadley, E.B., Woll, M.G., Markley, J.L., Gellman, S.H., and Cornilescu, C.C. 2007Solution structure of a small protein containing a fluorinated side chain in the core Protein Sci16(1):14-9 NMRStructural X 223PK17123960
Cornilescu, G., Vinarov, D.A., Tyler, E.M., Markley, J.L., and Cornilescu, C.C. 2006Solution structure of a single-domain thiosulfate sulfurtransferase from Arabidopsis thalianaProtein Sci 15(12):2836-41NMR Structural X 21PK17088324
Davis, C.A., Bingman, C.A., Landick, R., Record, M.T., Jr., and Saecker, R.M. 2007Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymeraseProc Natl Acad Sci USA 104(19):7833-8X-ray Method X 233K17470797
de la Cruz, N.B., Peterson, F.C., Lytle, B.L., and Volkman, B.F. 2007Solution structure of a membrane-anchored ubiquitin-fold (MUB) protein from Homo sapiensProtein Sci 16(7):1479-84NMR Structural X 224K17567738
de la Cruz, N.B., Peterson, F.C., and Volkman, B.F. 2008Solution structure of At3g28950 from Arabidopsis thalianaProteins 71(2):546-51NMR Structural X 233K18214976
Dias, J.S., Macedo, A.L., Ferreira, G.C., Peterson, F.C., Volkman, B.F., and Goodfellow, B.J. 2006The first structure from the SOUL/HBP family of heme-binding proteins, murine P22HBP J Biol Chem281(42):31553-61 NMRStructural X 21K16905545
DiMaio, F., Shavlik, J.D., and Phillips, G.N., Jr. 2006A probabilistic approach to protein backbone tracing in electron density maps Bioinformatics22(14):e81-9 BIMethod X 21K16873525
DiMaio, F., Soni, A., Phillips, G.N., Jr., and Shavlik, J. 2008Improved methods for template-matching electron density maps using spherical harmonics IEEE-BIBM Conference Proceedings (in press) X-rayMethod X 231K
DiMaio, F., Soni, A., Phillips, G.N., Jr., and Shavlik, J.W. 2007Creating all-atom protein models from electron-density maps using particle-filtering methods Bioinformatics23(21):2851-8 BIMethod X 222K17933855
Doreleijers, J.F., Mading, S., Maziuk, D., Sojourner, K., Yin, L., Zhu, J., Markley, J.L., and Ulrich, E.L. 2004BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank J Biomol NMR26(2):139-46 BIMethod X 1K12766409
Doreleijers, J.F., Nederveen, A.J., Vranken, W., Lin, J., Bonvin, A.M.J.J., Kaptein, R., Markley, J.L., and Ulrich, E.L. 2005BioMagResBank databases DOCR and FRED with converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures J Biomol NMR32(1):1-12 BIMethod X 1K16041478
Eghbalnia, H.R., Bahrami, A., Tonelli, M., Hallenga, K., and Markley, J.L. 2005High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection J Am Chem Soc127(36):12528-36 NMRMethod X 21K16144400
Eghbalnia, H.R., Bahrami, A., Wang, L., Assadi, A., and Markley, J.L. 2005Probabilistic Identification of Spin Systems and Their Assignments including Coil-Helix Inference as Output (PISTACHIO) J Biomol NMR32(3):219-33 NMRMethod X 21K16132822
Eghbalnia, H.R., Wang, L., Bahrami, A., Assadi, A., and Markley, J.L. 2005Protein energetic conformational analysis from NMR chemical shifts (PECAN) and its use in determining secondary structural elements J Biomol NMR32(1):71-81 NMRMethod X 1K16041485
Fogh, R., Ionides, J., Ulrich, E.L., Boucher, W., Vranken, W., Linge, J.P., Habeck, M., Rieping, W., Bhat, T.N., Westbrook, J., Henrick, K., Gilliland, G., Berman, H., Thornton, J.T., Nilges, M., Markley, J.L., and Laue, E. 2002The CCPN project: an interim report on a data model for the NMR community Nature Struct Biol9(6):416-8 NMRMethod X 1K12032555
Fox, B.G., Goulding, C., Malkowski, M.G., Stewart, L., and Deacon, A. 2008Structural genomics: from genes to structures with valuable materials and many questions in between Nat Methods5(2):129-32 NoneMethod X 233K18235432
Fox, B.G., Malone, T.E., Aceti, D.J., Bingman, C.A., Blommel, P.G., Buchan, B.W., Burns, B.T., Cao, J., Cornilescu, C.C., Doreleijers, J.F., Ellefson, J.M., Frederick, R.O., Geetha, H.V., Hruby, D., Jeon, W.B., Johnson, K.A., Kimball, T.L., Kunert, J., Madson, S.E., Markley, J.L., Newman, C.S., Olson, A.C., Peterson, F.C., Phillips, G.N., Jr., Primm, J.G., Ramirez, B., Rosenberg, N.S., Runnels, M., Seder, K.D., Shaw, J., Smith, D.W., Sreenath, H.K., Song, J., Sussman, M., R., Thao, S., Troestler, D.M., Tyler, E.M., Tyler, R.C., Ulrich, E.L., Vinarov, D.A., Vojtik, F.C., Volkman, B.F., Wesenberg, G.E., Wrobel, R.L., Zhang, J., Zhao, Q., and Zolnai, Z. 2005X-ray structure of Arabidopsis At1g77680, 12-oxophytodienolate reductase isoforms 1 Proteins61(1):206-8 X-rayStructural X 21K16080145
Frederick, R.O., Bergeman, L., Blommel, P.G., Bailey, L.J., McCoy, J.G., Song, J., Meske, L., Bingman, C.A., Riters, M., Dillon, N.A., Kunert, J., Yoon, J.W., Lim, A., Cassidy, M., Bunge, J., Aceti, D.J., Primm, J.G., Markley, J.L., Phillips, G.N., Jr., and Fox, B.G. 2007Small-scale, semi-automated purification of eukaryotic proteins for structure determination JSFG374(2):374-83 SSETMethod X 232K17985212
Han, B.W., Bingman, C.A., Mahnke, D.K., Bannen, R.M., Bednarek, S., Sabina, R.L., and Phillips, G.N., Jr. 2006Membrane association, mechanism of action, and structure of Arabidopsis embryonic factor 1 (FAC1)J Biol Chem 281(21):14939-47X-ray Structural X 231K16543243
Han, B.W., Bingman, C.A., Mahnke, D.K., Sabina, R.L., and Phillips, G.N., Jr. 2005Crystallization and preliminary X-ray crystallographic analysis of adenosine 5'- monophosphate deaminase (AMPD) from Arabidopsis thaliana in complex with coformycin 5'-phosphate Acta Crystallograph Sect F Struct Biol Cryst Commun 61(Pt 8):740-2X-ray Structural X 21PK16511144
Han, B.W., Bingman, C.A., Wesenberg, G.E., and Phillips, G.N., Jr. 2006Crystal structure of Homo sapiens thialysine Nepsilon-acetyltransferase (HsSSAT2) in complex with acetyl coenzyme A Proteins64(1):288-93 X-rayStructural X 221K16596569
Hayes, P.L., Lytle, B.L., Volkman, B.F., and Peterson, F.C. 2008The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominately unstructured protein Protein Sci17(3):571-6 NMRStructural X 233K18287285
Hegeman, A.D., Rodriguez, M., Han, B.W., Uno, Y., Phillips, G.N., Jr., Hrabak, E.M., Cushman, J.C., Harper, J.F., Harmon, A.C., and Sussman, M.R. 2006A phyloproteomic characterization of in vitro autophosphorylation in calcium dependent protein kinases Proteomics6(12):3649-64 X-rayMethod X 221K16758442
Jamrog, D.C., Phillips, G.N., Jr., Tapia, R., and Zhang, Y. 2005A global optimization method for the molecular replacement problem in X-ray crystallography Mathematical Programming Series B X-rayMethod X 1K
Jamrog, D.C., Zhang, Y., and Phillips, G.N., Jr. 2003SOMoRe: a multi-dimensional search and optimization approach to molecular replacement Acta Crystallogr D Biol Crystallogr 59(Pt 2):304-14X-ray Method X 1K12554941
Jamrog, D.C., Zhang, Y., and Phillips, G.N., Jr. 2004On the equivalence between a commonly used correlation coefficient and a least-squares function Acta Crystallogr A60(Pt 3):214-9 X-rayMethod X 1K15103164
Jeon, W.B., Aceti, D.J., Bingman, C.A., Vojtik, F.C., Olson, A.C., Ellefson, J.M., McCombs, J.E., Sreenath, H.K., Blommel, P.G., Seder, K.D., Buchan, B.W., Burns, B.T., Geetha, H.V., Harms, A., Sabat, G., Sussman, M.R., Fox, B.G., and Phillips, G.N., Jr. 2005High-throughput purification and quality assurance of Arabidopsis thaliana proteins for eukaryotic structural genomics JSFG6:143-7 PP MethodX 1K16211511
Jeon, W.B., Allard, S.T.M., Bingman, C.A., Bitto, E., Han, B.W., Wesenberg, G.E., and Phillips, G.N., Jr. 2006X-ray crystal structures of the conserved hypothetical proteins from Arabidopsis thaliana gene loci At5g11950 and At2g37210 Proteins65(4):1051-4 X-rayStructural X 221K17048257
Johnson, R.J., McCoy, J.G., Bingman, C.A., Phillips, G.N., Jr., and Raines, R.T. 2007Inhibition of human pancreatic ribonuclease by the human ribonuclease inhibitor protein J Mol Biol368(2):434-49 X-rayStructural X 223PK17350650
Kennedy, M.A., Montelione, G., Arrowsmith, C.H., and Markley, J.L. 2002Role for NMR in structural genomics JSFG2(3):155-69 NMRMethod X 1K12836706
Kifer, I., Sasson, O., and Linial, M. 2005 Predicting fold novelty based on ProtoNet hierarchical classification Bioinformatics21(7):1020-7 BIMethod X 1K15539447
Kundu, S., Melton, J.S., Sorensen, D.C., and Phillips, G.N., Jr. 2002Dynamics of proteins in crystals: comparison of experiment with simple models Biophys J83(2):723-32 X-rayMethod X 1K12124259
Kundu, S., Sorensen, D.C., and Phillips, G.N., Jr. 2004Automatic domain decomposition of proteins by a Gaussian Network Model Proteins57(4):725-33 BIMethod X 1K15478120
Lee, J.E., Bae, E., Bingman, C.A., Phillips, G.N., Jr., and Raines, R.T. 2007Structural basis for catalysis by onconase J Mol Biol:165-77 X-rayStructural X 222PK18001769
Levin, E.J., Kondrashov, D.A., Wesenberg, G.E., and Phillips, G.N., Jr. 2007Ensemble refinement of protein crystal structures, validation, and application Structure15(9):1040-52 X-rayMethod X 231K17850744
Lytle, B.L., Peterson, F.C., Kjer, K.L., Frederick, R.O., Zhao, Q., Thao, S., Bingman, C.A., Johnson, K.A., Phillips, G.N., Jr., and Volkman, B.F. 2004Structure of the hypothetical protein At3g17210 from Arabidopsis thalianaJ Biomol NMR 28(4):397-400NMR Structural X 1K14872131
Lytle, B.L., Peterson, F.C., Qiu, S.-H., Luo, M., Zhao, Q., Markley, J.L., and Volkman, B.F. 2004Solution structure of a ubiquitin-like domain from tubulin-binding cofactor B J Biol Chem279(45):46787-93 NMRStructural X 1K15364906
Lytle, B.L., Peterson, F.C., Tyler, E.M., Vinarov, D.A., Markley, J.L., and Volkman, B.F. 2006Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family Acta Crystallograph Sect F Struct Biol Cryst Commun 62(Pt 6):490-3NMR Structural X 221K16754964
Malone, T.E., Madson, S.E., Wrobel, R.L., Jeon, W.B., Rosenberg, N.S., Johnson, K.A., Bingman, C.A., Smith, D.W., Phillips, G.N., Jr., Markley, J.L., and Fox, B.G. 2004X-ray structure of Arabidopsis At2g06050, 12-oxophytodienoate reductase isoform 3 Proteins58(1):243-5 X-rayStructural X 1K15468319
Markley, J.L.2007 NMR-Based Structural Proteomics Spectral Techniques in Proteomics, Blackwell Publishing, Taylor and Francis Ltd. 349-71 NMRMethod X 224
Markley, J.L., Ulrich, E.L., Westler, W.M., and Volkman, B.F. 2003Macromolecular structure determination by NMR spectroscopy Methods of Biochemical Analysis, Wiley Publishers 44:89-113 NMRMethod 1K12647383
McCoy, J.G., Arabshahi, A., Bitto, E., Bingman, C.A., Ruzicka, F.J., Frey, P.A., and Phillips, G.N., Jr. 2006Structure and mechanism of an ADP-glucose phosphorylase from Arabidopsis thalianaBiochemistry 45(10):3154-62X-ray Structural X 21K16519510
McCoy, J.G., Bailey, L.J., Bitto, E., Bingman, C.A., Aceti, D.J., Fox, B.G., and Phillips, G.N., Jr. 2006Structure and mechanism of mouse cysteine dioxygenase Proc Natl Acad Sci USA 103(9):3084-9 X-rayStructural X 21PK16492780
McCoy, J.G., Bingman, C.A., Bitto, E., Holdorf, M.M., Makaroff, C.A., and Phillips, G.N., Jr. 2006Structure of an ETHE1-like protein from Arabidopsis thalianaActa Crystallogr D Biol Crystallogr 62(Pt 9):964-70X-ray Structural X 21K16929096
McCoy, J.G., Bitto, E., Bingman, C.A., Wesenberg, G.E., Bannen, R.M., Kondrashov, D.A., and Phillips, G.N., Jr. 2006Structure and dynamics of UDP-glucose pyrophosphorylase from Arabidopsis thaliana with bound UDP-glucose and UTP J Mol Biol366(3):830-41 X-rayStructural X 221PK17178129
Moe, L.A., Bingman, C.A., Wesenberg, G.E., Phillips, G.N., Jr., and Fox, B.G. 2006Structure of T4moC, the Rieske-type ferredoxin component of toluene 4-monooxygenase Acta Crystallogr D Biol Crystallogr 62(Pt 5):476-82X-ray Structural X 21K16627939
Nederveen, A.J., Doreleijers, J.F., Vranken, W., Miller, Z., Spronk, C.A.E.M., Nabuurs, S.B., Guntert, P., Livny, M., Markley, J.L., Nilges, M., Ulrich, E.L., Kaptein, R., and Bonvin, A.M.J.J. 2005RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank Proteins59(4):662-72 BIMethod X 1K15822098
Oldfield, C.J., Ulrich, E.L., Cheng, Y.G., Dunker, A.K., and Markley, J.L. 2004Addressing the intrinsic disorder bottleneck in structural proteomics Proteins59(3):444-53 BIMethod X 1K15789434
Pan, X., Wesenberg, G.E., Markley, J.L., Fox, B.G., Phillips, G.N., Jr., and Bingman, C.A. 2008A graphical approach to tracking and reporting target status in structural genomics JSFG8(4):209-16 BI MethodX 233K18236171
Peterson, F.C., Hayes, P.L., Waltner, J.K., Heisner, A.K., Jensen, D.R., Sander, T.L., and Volkman, B.F. 2006Structure of the SCAN domain from the tumor suppressor protein MZF1 J Mol Biol363(1):137-47 NMRStructural X 21PK16950398
Peterson, F.C., Lytle, B.L., Sampath, S., Vinarov, D.A., Tyler, E.M., Shahan, M.N., Markley, J.L., and Volkman, B.F. 2005Solution structure of thioredoxin h1 from Arabidopsis thalianaProtein Sci 14(8):2195-200NMR Structural X 1K15987893
Phillips, G.N., Jr., Fox, B.G., Markley, J.L., Volkman, B.F., Bae, E., Bitto, E., Bingman, C.A., Frederick, R.O., McCoy, J.G., Lytle, B.L., Pierce, B.S., Song, J., and Twigger, S.N. 2007Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics JSFG8(2-3):73-84 AllStructural X 231K17786587
Rayment, I.2002 Small-scale batch crystallization of proteins revisited: an underutilized way to grow large protein crystals Structure10(2):147-51 X-rayMethod X 1K11839300
Sabina, R.L., Paul, A.L., Ferl, R.J., Laber, B., and Lindell, S.D. 2007Adenine nucleotide pool perturbation is a metabolic trigger for AMP deaminase inhibitor-based herbicide toxicity Plant Physiol143(4):1752-60 NoneMethod X 224K17307896
Sasson, O., and Linial, M.2005 Predicting fold novelty based on ProtoNet hierarchical classification Bioinformatics21(7):1020-7 BIMethod X 21K15539447
Singh, S., Cornilescu, C.C., Tyler, R.C., Cornilescu, G., Tonelli, M., Lee, M.S., and Markley, J.L. 2005Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein Protein Sci14(10):2601-9 NMRStructural X 21K16155204
Singh, S., Hager, M.H., Zhang, C., Griffith, B.R., Lee, M.S., Hallenga, K., Markley, J.L., and Thorson, J.S. 2006Structural insight into the self-sacrifice mechanism of enediyne resistance ACS Chem Biol1(7):451-60 NMRStructural X 221K17168523
Singh, S., Tonelli, M., Tyler, R.C., Bahrami, A., Lee, M.S., and Markley, J.L. 2005Three-dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1Protein Sci 14(8):2095-102NMR Structural X 1K16046629
Skjeldal, L., Peterson, F.C., Moe, L.A., Pikus, J.D., Doreleijers, J.F., Volkman, B.F., Westler, W.M., Markley, J.L., and Fox, B.G. 2004Solution structure of T4moC, the Rieske ferredoxin component of the toluene 4-monooxygenase complex J Inorg Biol Chem9(8):945-53 NMRStructural X 1K15452777
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