| AUTHORS |
YEAR |
TITLE |
JOURNAL/BOOK |
VOL/ISSUE/PAGES |
TEAM |
TYPE |
PDF |
CODE |
PUBMED/
PUBMED CENTRAL |
| Aceti DJ, Bitto E, Yakunin AF, Proudfoot M, Bingman CA, Frederick RO, Sreenath HK, Vojtik FC, Wrobel RL, Fox BG, Markley JL, Phillips GN, Jr |
2008 |
Structural and functional characterization of a novel phosphatase from the Arabidopsis thaliana gene locus At1g05000 |
Proteins |
73(1):241-53 |
X-ray |
Structural
PDB ID:1XRI |
X |
241K |
PMID:18433060
NIHMSID:NIHMS134274 |
| Aceti DJ, Blommel PG, Endo Y, Fox BG, Frederick RO, Hegeman AD, Jeon WB, Kimball TL, Lee JM, Newman CS, Peterson FC, Sawasaki T, Seder KD, Sussman MR, Ulrich EL, Wrobel RL, Thao S, Vinarov DA, Volkman BF, Zhao Q |
2003 |
Role of nucleic acid and protein manipulation technologies in high-throughput structural biology efforts |
Biopolymers, Wiley-VCH, Weinheim |
8:469-96 |
PP |
Method |
X |
1K |
No PMID |
| Allard STM, Bingman CA, Johnson KA, Wesenberg GE, Bitto E, Jeon WB, Phillips GN, Jr |
2005 |
Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thaliana |
Acta Crystallograph Sect F Struct Biol Cryst Commun |
61(Pt 7):647-50 |
X-ray |
Structural
PDB ID:1VK5 |
X |
1K |
PMID:16511118
PMCID:PMC1952470 |
| Aranda R, Worley CE, Liu M, Bitto E, Cates MS, Olson JS, Lei B, Phillips GN, Jr |
2007 |
Bis-methionyl coordination in the crystal structure of the heme-binding domain of the streptococcal cell surface protein Shp |
J Mol Biol |
374(2):374-83 |
X-ray |
Structural
PDB ID:2Q7A |
X |
232K |
PMID:17920629
PMCID:PMC2386982 |
| Arangarasan R, Phillips GN, Jr |
2002 |
Modular approach of multimodal integration in a virtual environment |
Proceedings of the Fourth IEEE International Conference on Multimodal Interfaces (ICMI '02), IEEE Computer Society |
331 |
X-ray |
Method |
X |
1K |
No PMID |
| Bae E, Bannen RM, Phillips GN, Jr |
2008 |
Bioinformatic method for protein thermal stabilization by structural entropy optimization |
Proc Natl Acad Sci USA |
105(28):9594-7 |
X-ray |
Method |
X |
241K |
PMID:18621726
PMCID:PMC2474475 |
| Bae E, Bingman CA, Bitto E, Aceti DJ, Phillips GN, Jr |
2008 |
Crystal structure of Arabidopsis thaliana cytokinin dehydrogenase |
Proteins |
70(1):303-6 |
X-ray |
Structural
PDB ID:2EXR |
X |
232K |
PMID:17886275 |
| Bae E, Bingman CA, Bitto E, Aceti DJ, Phillips GN, Jr |
2008 |
Crystal structure of Homo sapiens protein LOC79017 |
Proteins |
70(2):588-91 |
X-ray |
Structural
PDB ID:2I5T |
X |
232K |
PMID:17932939 |
| Bae E, Bitte E, Bingman CA, McCoy JG, Wesenberg GE, Phillips GN, Jr |
2010 |
Crystal structure of an eIF4G-like protein from Danio rerio |
Proteins |
(in press) |
X-ray |
Structural
PDB ID:2I2O |
X |
|
PMID:20229607
PMCID:PMC2859309 |
| Bae E, Reiter NJ, Bingman CA, Kwan SS, Lee D, Phillips GN, Jr, Butcher SE, Brow DA |
2007 |
Structure and interactions of the first three RNA recognition motifs of splicing factor prp24 |
J Mol Biol |
367(5):1447-58 |
X-ray |
Structural
PDB ID:2GHP |
X |
231K |
PMID:17320109
PMCID:PMC1939982 |
| Bahrami A, Assadi AH, Markley JL, Eghbalnia HR |
2009 |
Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy |
PLoS Comput Biol |
5(3):e1000307 |
NMR |
Method |
X |
244K |
PMID:19282963
PMCID:PMC2645676 |
| Bannen RM, Bingman CA, Phillips GN, Jr |
2007 |
Effect of low-complexity regions on protein structure determination |
J Struct Func Genomics |
8(4):217-26 |
X-ray |
Method |
X |
233K |
PMID:18302007 |
| Bannen RM, Suresh V, Phillips GN, Jr, Wright SJ, Mitchell JC |
2008 |
Optimal design of thermally stable proteins |
Bioinformatics |
24(20):2339-43 |
BI |
Method |
X |
242K |
PMID:18723523
PMCID:PMC2562006 |
| Bianchetti CM, Blouin GC, Bitto E, Olson JS, Phillips GN, Jr |
2010 |
The structure and NO binding properties of the nitrophorin-like heme-binding protein from Arabidopsis thaliana gene locus At1g79260.1 |
Proteins |
78(4):917-31 |
X-ray |
Structural
PDB ID:2A13, PDB ID:2Q4N, PDB ID:3EMM |
X |
252K |
PMID:19938152
PMCID:PMC2811769 |
| Bianchetti CM, Yi L, Ragsdale SW, Phillips GN, Jr |
2007 |
Comparison of apo- and heme-bound crystal structures of a truncated human heme oxygenase-2 |
J Biol Chem |
282(52):37624-31 |
X-ray |
Structural
PDB ID:2Q32 |
X |
232K |
PMID:17965015 |
| Bingman CA, Johnson KA, Peterson FC, Frederick RO, Zhao Q, Thao S, Fox BG, Volkman BF, Jeon WB, Smith DW, Newman CS, Ulrich EL, Hegeman AD, Sussman MR, Markley JL, Phillips GN, Jr |
2004 |
Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana |
Proteins |
57(1):218-20 |
X-ray |
Structural
PDB ID:1Q4R |
X |
1K |
PMID:15326607 |
| Bitto E, Bingman CA, Allard STM, Wesenberg GE, Aceti DJ, Wrobel RL, Frederick RO, Sreenath HK, Vojtik FC, Jeon WB, Newman CS, Primm JG, Sussman MR, Fox BG, Markley JL, Phillips GN, Jr |
2005 |
The structure at 2.4 A resolution of the protein from gene locus At3g21360, a putative FeII/2-oxoglutarate-dependent enzyme from Arabidopsis thaliana |
Acta Crystallograph Sect F Struct Biol Cryst Commun |
61(Pt 5):469-72 |
X-ray |
Structural
PDB ID:1Y0Z |
X |
1K |
PMID:16511070
PMCID:PMC1952295 |
| Bitto E, Bingman CA, Allard STM, Wesenberg GE, Phillips GN, Jr |
2005 |
The structure at 1.7 A resolution of the protein product of the At2g17340 gene from Arabidopsis thaliana |
Acta Crystallograph Sect F Struct Biol Cryst Commun |
61(Pt 7):630-5 |
X-ray |
Structural
PDB ID:1XFI |
X |
1K |
PMID:16511115
PMCID:PMC1952457 |
| Bitto E, Bingman CA, Bittova L, Kondrashov DA, Bannen RM, Fox BG, Markley JL, Phillips GN, Jr |
2008 |
Structure of human J-type co-chaperone HscB reveals a tetracysteine metal binding domain |
J Biol Chem |
283(44):30184-92 |
X-ray |
Structural
PDB ID:3BVO |
X |
242K |
PMID:18713742
PMCID:PMC2573069 |
| Bitto E, Bingman CA, Bittova L, Frederick RO, Fox BG, Phillips GN, Jr |
2009 |
X-ray structure of Danio rerio secretagogin, a hexa-EF-hand calcium sensor |
Proteins |
76(2):477-483 |
X-ray |
Structural
PDB ID:1TIZ |
X |
243K |
PMID:19241471
PMCID:PMC2742686 |
| Bitto E, Bingman CA, Bittova L, Houston NL, Boston RS, Fox BG, Phillips GN, Jr |
2009 |
X-ray structure of ILL2, an auxin-conjugate amidohydrolase from Arabidopsis thaliana |
Proteins |
74(1):61-71 |
X-ray |
Structural
PDB ID:1XMB |
X |
241K |
PMID:18543330
PMCID:PMC2605170 |
| Bitto E, Bingman CA, Kondrashov DA, McCoy JG, Bannen RM, Wesenberg GE, Phillips GN, Jr |
2008 |
Structure and dynamics of gamma-SNAP: insight into flexibility of proteins from the SNAP family |
Proteins |
70(1):93-104 |
X-ray |
Structural
PDB ID:2IFU |
X |
224K |
PMID:17634982 |
| Bitto E, Bingman CA, McCoy JG, Allard STM, Wesenberg GE, Phillips GN, Jr |
2005 |
The structure at 1.6 A resolution of the protein product of the At4g34215 gene from Arabidopsis thaliana |
Acta Crystallogr D Biol Crystallogr |
61(Pt 12):1655-61 |
X-ray |
Structural
PDB ID:2APJ |
X |
21K |
PMID:16301800 |
| Bitto E, Bingman CA, Robinson H, Allard STM, Wesenberg GE, Phillips GN, Jr |
2005 |
The crystal structure at 2.5 A resolution of human basophilic leukemia expressed protein BLES03 |
Acta Crystallograph Sect F Struct Biol Cryst Commun |
61(Pt 9):812-7 |
X-ray |
Structural
PDB ID:1ZTP |
X |
1K |
PMID:16511166
PMCID:PMC1978119 |
| Bitto E, Bingman CA, Wesenberg GE, McCoy JG, Phillips GN, Jr |
2006 |
Structure of pyrimidine 5'-nucleotidase type 1: Insight into mechanism of action and inhibition during lead poisoning |
J Biol Chem |
281(29):20521-9 |
X-ray |
Structural
PDB ID:2BDU |
X |
221K |
PMID:16672222 |
| Bitto E, Bingman CA, Wesenberg GE, McCoy JG, Phillips GN, Jr |
2007 |
Structure of aspartoacylase, the brain enzyme impaired in Canavan disease |
Proc Natl Acad Sci USA |
104(2):456-61 |
X-ray |
Structural
PDB ID:2GU2 |
X |
223K |
PMID:17194761
PMCID:PMC1766406 |
| Bitto E, Huang Y, Bingman CA, Singh S, Thorson JS, Phillips GN, Jr |
2008 |
The structure of flavin-dependent tryptophan 7-halogenase RebH |
Proteins |
70(1):289-93 |
X-ray |
Structural
PDB ID:2O9Z, PDB ID:2OA1 |
X |
232K |
PMID:17876823 |
| Blommel PG, Becker KJ, Duvnjak P, Fox BG |
2007 |
Enhanced bacterial protein expression during auto-induction obtained by alteration of lac repressor dosage and medium composition |
Biotechnol Prog |
23(3):585-98 |
Cloning |
Method |
X |
223K |
PMID:17506520 |
| Blommel PG, Fox BG |
2005 |
Fluorescence anisotropy for proteolysis of specifically labeled fusion proteins |
Anal Biochem |
336(1):75-86 |
Cloning |
Method |
X |
1K |
PMID:15582561 |
| Blommel PG, Fox BG |
2007 |
A combined approach to improving large-scale production of tobacco etch virus protease |
Protein Expr Purif |
55(1):53-68 |
Cloning |
Method |
X |
223K |
PMID:17543538
PMCID:PMC2047602 |
| Blommel PG, Martin PA, Seder KD, Wrobel RL, Fox BG |
2009 |
Flexivector cloning |
Methods Mol Biol |
498:55-73 |
Cloning |
Method |
X |
244K |
PMID:18988018
PMCID Exempt |
| Blommel PG, Martin PA, Wrobel RL, Steffen E, Fox BG |
2006 |
High-efficiency single-step production of expression plasmids from cDNA clones using the FlexiVector cloning system |
Protein Expr Purif |
47(2):562-70 |
Cloning |
Method |
X |
21K |
PMID:16377204 |
| Blommel PG, Smith DW, Bingman CA, Dyer DH, Rayment I, Holden HM, Fox BG, Phillips GN, Jr |
2004 |
Crystal structure of gene locus At3g16990 from Arabidopsis thaliana |
Proteins |
57(1):221-2 |
Cloning |
Structural
PDB ID:2F2G |
X |
1K |
PMID:15326608 |
| Chae YK, Im H, Zhao Q, Doelling JH, Vierstra RD, Markley JL |
2004 |
Prevention of aggregation after refolding by balanced stabilization-destabilization: production of the Arabidopsis thaliana protein APG8a (At4g21980) for NMR structure determination |
Protein Expr Purif |
34(2):280-3 |
NMR |
Structural
PDB ID:1G10, PDB ID:1G11 |
X |
1K |
PMID:15003262 |
| Chae YK, Lee K, Markley JL |
2005 |
1H, 15N, and 13C resonance assignments of a protein involved in the autophagy process, At4g21980.1 from Arabidopsis thaliana |
J Biomol NMR |
32(4):337 |
NMR |
Structural |
X |
21K |
PMID:16211491 |
| Chang Y, Wesenberg G, Bingman CA, Fox BG |
2008 |
In vivo inactivation of mycobacterial integral membrane stearoyl-CoA desaturase DesA3 by a C-terminal specific degradation process |
J Bacteriol |
190(20):6686-96 |
Cloning |
Method |
X |
242K |
PMID:18723625
PMCID:PMC2566213 |
| Chang Y, Mead D, Dhodda V, Brumm P, Fox BG |
2009 |
One-plasmid tunable co-expression for mycobacterial protein-protein interaction studies |
Protein Sci |
18(11):2316-25 |
Cloning |
Method |
X |
252K |
PMID:19760663
PMCID:PMC2788286 |
| Cornilescu CC, Porter FW, Zhao KQ, Palmenberg AC, Markley JL |
2008 |
NMR structure of the mengovirus Leader protein zinc-finger domain |
FEBS Lett |
582(6):896-900 |
NMR |
Structural
PDB ID:2BAI |
X |
241K |
PMID:18291103 |
| Cornilescu G, Ulijasz AT, Cornilescu CC, Markley JL, Vierstra RD |
2008 |
Solution structure of a cyanobacterial phytochrome GAF domain in the red-light absorbing ground state |
J Mol Biol |
383(2):403-13 |
NMR |
Structural
PDB ID:2K2N |
X |
242K |
PMID:18762196
PMCID:PMC2782646 |
| Cornilescu G, Bahrami A, Tonelli M, Markley JL, Eghbalnia HR |
2007 |
HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections |
J Biomol NMR |
38(4):341-51 |
NMR |
Method |
X |
232K |
PMID:17610130 |
| Cornilescu G, Cornilescu CC, Zhao Q, Frederick RO, Peterson FC, Thao S, Markley JL |
2004 |
Solution structure of a homodimeric hypothetical protein, At5g22580, a structural genomics target from Arabidopsis thaliana |
J Biomol NMR |
29(3):387-90 |
NMR |
Structural
PDB ID:1RJJ |
X |
1K |
PMID:15213437 |
| Cornilescu G, Hadley EB, Woll MG, Markley JL, Gellman SH, Cornilescu CC |
2007 |
Solution structure of a small protein containing a fluorinated side chain in the core |
Protein Sci |
16(1):14-9 |
NMR |
Structural
PDB ID:2JM0 |
X |
224K |
PMID:17123960
PMCID:PMC2222841 |
| Cornilescu G, Vinarov DA, Tyler EM, Markley JL, Cornilescu CC |
2006 |
Solution structure of a single-domain thiosulfate sulfurtransferase from Arabidopsis thaliana |
Protein Sci |
15(12):2836-41 |
NMR |
Structural
PDB ID:1TQ1 |
X |
221K |
PMID:17088324
PMCID:PMC2242445 |
| Davis CA, Bingman CA, Landick R, Record MT, Jr, Saecker RM |
2007 |
Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase |
Proc Natl Acad Sci USA |
104(19):7833-8 |
X-ray |
Method |
X |
234K |
PMID:17470797
PMCID:PMC1876533 |
| de la Cruz NB, Peterson FC, Lytle BL, Volkman BF |
2007 |
Solution structure of a membrane-anchored ubiquitin-fold (MUB) protein from Homo sapiens |
Protein Sci |
16(7):1479-84 |
NMR |
Structural
PDB ID:2GOW |
X |
231K |
PMID:17567738
PMCID:PMC2206703 |
| de la Cruz NB, Peterson FC, Volkman BF |
2008 |
Solution structure of At3g28950 from Arabidopsis thaliana |
Proteins |
71(2):546-51 |
NMR |
Structural
PDB ID:2JQV |
X |
234K |
PMID:18214976
PMCID:PMC2758156 |
| Dias JS, Macedo AL, Ferreira GC, Peterson FC, Volkman BF, Goodfellow, BJ |
2006 |
The first structure from the SOUL/HBP family of heme-binding proteins, murine P22HBP |
J Biol Chem |
281(42):31553-61 |
NMR |
Structural
PDB ID:2GOV |
X |
221K |
PMID:16905545 |
| DiMaio F, Shavlik JD, Phillips GN, Jr |
2006 |
A probabilistic approach to protein backbone tracing in electron density maps |
Bioinformatics |
22(14):e81-9 |
BI |
Method |
X |
221K |
PMID:16873525 |
| DiMaio FP, Soni AB, Phillips GN, Jr, Shavlik JW |
2009 |
Spherical-harmonic decomposition for molecular recognition in electron-density maps |
Intl J Data Mining Bioinformatics |
3(2):205-27 |
BI |
Method |
X |
232K |
PMID:19517990
PMCID:PMC2696052 |
| DiMaio F, Soni A, Phillips GN, Jr, Shavlik JW |
2007 |
Creating all-atom protein models from electron-density maps using particle-filtering methods |
Bioinformatics |
23(21):2851-8 |
BI |
Method |
X |
223K |
PMID:17933855
PMCID:PMC2567142 |
| DiMaio F, Soni A, Phillips GN, Jr, Shavlik JW |
2007 |
Improved methods for template-matching in electron-density maps using spherical harmonics |
IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007), IEEE Computer Society |
258-65 |
BI |
Method |
X |
|
No PMID |
| Doreleijers, JF, Mading S, Maziuk D, Sojourner K, Yin L, Zhu J, Markley JL, Ulrich EL |
2003 |
BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank |
J Biomol NMR |
26(2):139-46 |
BI |
Method |
X |
1K |
PMID:12766409 |
| Doreleijers JF, Nederveen AJ, Vranken W, Lin J, Bonvin AMJJ, Kaptein R, Markley JL, Ulrich EL |
2005 |
BioMagResBank databases DOCR and FRED with converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures |
J Biomol NMR |
32(1):1-12 |
BI |
Method |
X |
1K |
PMID:16041478 |
| Eghbalnia HR, Bahrami A, Tonelli M, Hallenga K, Markley JL |
2005 |
High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection |
J Am Chem Soc |
127(36):12528-36 |
NMR |
Method |
X |
21K |
PMID:16144400 |
| Eghbalnia HR, Bahrami A, Wang L, Assadi A, Markley JL |
2005 |
Probabilistic Identification of Spin Systems and Their Assignments including Coil-Helix Inference as Output (PISTACHIO) |
J Biomol NMR |
32(3):219-33 |
NMR |
Method |
X |
21K |
PMID:16132822 |
| Eghbalnia HR, Wang L, Bahrami A, Assadi A, Markley JL |
2005 |
Protein energetic conformational analysis from NMR chemical shifts (PECAN) and its use in determining secondary structural elements |
J Biomol NMR |
32(1):71-81 |
NMR |
Method |
X |
1K |
PMID:16041485 |
| Fogh R, Ionides J, Ulrich EL, Boucher W, Vranken W, Linge JP, Habeck M, Rieping W, Bhat TN, Westbrook J, Henrick K, Gilliland G, Berman H, Thornton JT, Nilges M, Markley JL, Laue E |
2002 |
The CCPN project: an interim report on a data model for the NMR community |
Nat Struct Biol |
9(6):416-8 |
NMR |
Method |
X |
1K |
PMID:12032555 |
| Fox BG, Blommel PG |
2009 |
Autoinduction of protein expression |
Curr Protoc Protein Sci |
Chapter 5:Unit 5.23 |
Cloning |
Method |
|
251K |
PMID:19365792 |
| Fox BG, Goulding C, Malkowski MG, Stewart L, Deacon A |
2008 |
Structural genomics: from genes to structures with valuable materials and many questions in between |
Nat Methods |
5(2):129-32 |
All |
Method |
X |
234K |
PMID:18235432 |
| Fox BG, Malone TE, Aceti DJ, Bingman CA, Blommel PG, Buchan BW, Burns BT, Cao J, Cornilescu CC, Doreleijers JF, Ellefson JM, Frederick RO, Geetha HV, Hruby D, Jeon WB, Johnson KA,
Kimball TL, Kunert J, Madson SE, Markley JL, Newman CS, Olson AC, Peterson FC, Phillips GN, Jr, Primm JG, Ramirez B, Rosenberg NS, Runnels M, Seder KD, Shaw J, Smith DW, Sreenath HK, Song J, Sussman MR, Thao S, Troestler DM,
Tyler EM, Tyler RC, Ulrich EL, Vinarov DA, Vojtik FC, Volkman BF, Wesenberg GE, Wrobel RL, Zhang J, Zhao Q, Zolnai Z |
2005 |
X-ray structure of Arabidopsis At1g77680, 12-oxophytodienolate reductase isoforms 1 |
Proteins |
61(1):206-8 |
X-ray |
Structural
PDB ID:1VJI |
X |
21K |
PMID:16080145 |
| Frederick RO, Bergeman L, Blommel PG, Bailey LJ, McCoy JG, Song J, Meske L, Bingman CA, Riters M, Dillon NA, Kunert J, Yoon JW, Lim A, Cassidy M, Bunge J, Aceti DJ, Primm JG, Markley
JL, Phillips GN, Jr, Fox BG |
2007 |
Small-scale, semi-automated purification of eukaryotic proteins for structure determination |
J Struct Func Genomics |
8(4):153-66 |
SSET |
Method |
X |
233K |
PMID:17985212
PMCID:PMC2668602 |
| Gaetano T. Montelione , Cheryl Arrowsmith, Mark E. Girvin, Michael A. Kennedy, John L. Markley, Robert Powers, James H. Prestegard and Thomas Szyperski |
2009 |
Unique opportunities for NMR methods in structural genomics |
J Struct Func Genomics |
10(2):101-6 |
NMR |
Method |
|
|
PMID:19288278
PMCID:PMC2705713 |
| Goren MA, Fox BG |
2008 |
Wheat germ cell-free translation, purification, and assembly of a functional human stearoyl-CoA desaturase complex |
Protein Expr Purif |
62(2):171-8 |
PP |
Method |
X |
242K |
PMID:18765284
PMCID:PMC2586813 |
| Goren MA, Nozawa A, Makino S, Wrobel RL, Fox BG |
2009 |
Cell-free translation of integral membrane proteins into unilamelar liposomes |
Methods Enzymol |
463:647-73 |
PP |
Method |
|
253K |
PMID:19892197
PMCID Exempt |
| Han BW, Bingman CA, Mahnke DK, Bannen RM, Bednarek S, Sabina RL, Phillips GN, Jr |
2006 |
Membrane association, mechanism of action, and structure of Arabidopsis embryonic factor 1 (FAC1) |
J Biol Chem |
281(21):14939-47 |
X-ray |
Structural
PDB ID:2A3L |
X |
232K |
PMID:16543243 |
| Han BW, Bingman CA, Mahnke DK, Sabina RL, Phillips GN, Jr |
2005 |
Crystallization and preliminary X-ray crystallographic analysis of adenosine 5'- monophosphate deaminase (AMPD) from Arabidopsis thaliana in complex with coformycin
5'-phosphate |
Acta Crystallograph Sect F Struct Biol Cryst Commun |
61(Pt 8):740-2 |
X-ray |
Structural
PDB ID:2A3L |
X |
21K |
PMID:16511144
PMCID:PMC1952363 |
| Han BW, Bingman CA, Wesenberg GE, Phillips GN, Jr |
2006 |
Crystal structure of Homo sapiens thialysine Nepsilon-acetyltransferase (HsSSAT2) in complex with acetyl coenzyme A |
Proteins |
64(1):288-93 |
X-ray |
Structural
PDB ID:2BEI |
X |
222K |
PMID:16596569 |
| Haquin S, Oeuillet E, Pajon A, Harris M, Jones AT, van Tilbeurgh H, Markley JL |
2008 |
Data management in structural genomics: An overview |
Method Mol Biol |
426:49-79 |
Sesame |
Method |
X |
223K |
PMID:18542857 |
| Hayes PL, Lytle BL, Volkman BF, Peterson FC |
2008 |
The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominately unstructured protein |
Protein Sci |
17(3):571-6 |
NMR |
Structural
PDB ID:1ZR9 |
X |
234K |
PMID:18287285
PMCID:PMC2248319 |
| Hegeman AD, Rodriguez M, Han BW, Uno Y, Phillips GN, Jr, Hrabak EM, Cushman JC, Harper JF, Harmon AC, Sussman MR |
2006 |
A phyloproteomic characterization of in vitro autophosphorylation in calcium dependent protein kinases |
Proteomics |
6(12):3649-64 |
X-ray |
Method |
X |
222K |
PMID:16758442 |
| Jamrog DC, Phillips GN, Jr, Tapia R, Zhang Y |
2005 |
A global optimization method for the molecular replacement problem in X-ray crystallography |
Mathematical Programming |
Series B |
X-ray |
Method |
X |
1K |
No PMID |
| Jamrog DC, Zhang Y, Phillips GN, Jr |
2003 |
SOMoRe: a multi-dimensional search and optimization approach to molecular replacement |
Acta Crystallogr D Biol Crystallogr |
59(Pt 2):304-14 |
X-ray |
Method |
X |
1K |
PMID:12554941 |
| Jamrog DC, Zhang Y, Phillips GN, Jr |
2004 |
On the equivalence between a commonly used correlation coefficient and a least-squares function |
Acta Crystallogr A |
60(Pt 3):214-9 |
X-ray |
Method |
X |
1K |
PMID:15103164 |
| Jensen DR, Woytovich C, Li M, Duvnjak P, Cassidy MS, Frederick RO, Bergeman LF, Peterson FC, Volkman BF |
2010 |
Rapid, robotic, small-scale protein production for NMR screening and structure determination |
Prot Sci |
19(3):570-8 |
PP |
Method |
|
|
PMID:20073081 |
| Jeon WB, Aceti DJ, Bingman CA, Vojtik FC, Olson AC, Ellefson JM, McCombs JE, Sreenath HK, Blommel PG, Seder KD, Buchan BW, Burns BT, Geetha HV, Harms A, Sabat G, Sussman MR,
Fox BG, Phillips GN, Jr |
2005 |
High-throughput purification and quality assurance of Arabidopsis thaliana proteins for eukaryotic structural genomics |
J Struct Func Genomics |
6(2-3):143-7 |
PP |
Method |
X |
1K |
PMID:16211511 |
| Jeon WB, Allard STM, Bingman CA, Bitto E, Han BW, Wesenberg GE, Phillips GN, Jr |
2006 |
X-ray crystal structures of the conserved hypothetical proteins from Arabidopsis thaliana gene loci At5g11950 and At2g37210 |
Proteins |
65(4):1051-4 |
X-ray |
Structural
PDB ID:2A33 |
X |
222K |
PMID:17048257 |
| Johnson RJ, McCoy JG, Bingman CA, Phillips GN, Jr, Raines RT |
2007 |
Inhibition of human pancreatic ribonuclease by the human ribonuclease inhibitor protein |
J Mol Biol |
368(2):434-49 |
X-ray |
Structural
PDB ID:1Z7X |
X |
224K |
PMID:17350650
PMCID:PMC1993901 |
| Kennedy MA, Montelione G, Arrowsmith CH, Markley JL |
2002 |
Role for NMR in structural genomics |
J Struct Func Genomics |
2(3):155-69 |
NMR |
Method |
X |
1K |
PMID:12836706 |
| Kifer I, Sasson O, Linial M |
2005 |
Predicting fold novelty based on ProtoNet hierarchical classification |
Bioinformatics |
21(7):1020-7 |
BI |
Method |
X |
21K |
PMID:15539447 |
| Kundu S, Melton JS, Sorensen DC, Phillips GN, Jr |
2002 |
Dynamics of proteins in crystals: comparison of experiment with simple models |
Biophys J |
83(2):723-32 |
X-ray |
Method |
X |
1K |
PMID:12124259
PMCID:PMC1302181 |
| Kundu S, Sorensen DC, Phillips GN, Jr |
2004 |
Automatic domain decomposition of proteins by a Gaussian Network Model |
Proteins |
57(4):725-33 |
BI |
Method |
X |
1K |
PMID:15478120 |
| Lee JE, Bae E, Bingman CA, Phillips GN, Jr, Raines RT |
2008 |
Structural basis for catalysis by onconase |
J Mol Biol |
375(1):165-77 |
X-ray |
Structural
PDB ID:2GMK |
X |
223K |
PMID:18001769
PMCID:PMC2151974 |
| Lee W, Westler WM, Bahrami A, Eghbalnia HR, Markley JL |
2009 |
PINE-SPARKY: Graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy |
Bionformatics |
25(16):2085-7 |
NMR |
Method |
X |
251K |
PMID:19497931
PMCID:PMC2723000 |
| Levin EJ, Elsen NL, Seder KD, McCoy JG, Fox BG, Phillips GN, Jr |
2008 |
X-ray structure of a soluble Rieske-type ferredoxin from Mus musculus |
Acta Crystallogr D Biol Crystallogr |
64(Pt 9):933-40 |
X-ray |
Structural
PDB ID:3D89 |
X |
242K |
PMID:18703841
PMCID:PMC2631127 |
| Levin EJ, Kondrashov DA, Wesenberg GE, Phillips GN, Jr |
2007 |
Ensemble refinement of protein crystal structures, validation, and application |
Structure |
15(9):1040-52 |
X-ray |
Method |
X |
232K |
PMID:17850744
PMCID:PMC2039884 |
| Lytle BL, Song J, de la Cruz NB, Peterson FC, Johnson KA, Bingman CA, Phillips GN Jr, Volkman BF |
2009 |
Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds |
Proteins |
76(1):237-43 |
NMR |
Structural
PDB ID:1VJH, PDB ID:2I9Y |
X |
244K |
PMID:19326460
PMCID:PMC2845785 |
| Lytle BL, Peterson FC, Kjer KL, Frederick RO, Zhao Q, Thao S, Bingman CA, Johnson KA, Phillips GN, Jr, Volkman BF |
2004 |
Structure of the hypothetical protein At3g17210 from Arabidopsis thaliana |
J Biomol NMR |
28(4):397-400 |
NMR |
Structural
PDB ID:1Q53 |
X |
1K |
PMID:14872131 |
| Lytle BL, Peterson FC, Qiu S-H, Luo M, Zhao Q, Markley JL, Volkman BF |
2004 |
Solution structure of a ubiquitin-like domain from tubulin-binding cofactor B |
J Biol Chem |
279(45):46787-93 |
NMR |
Structural
PDB ID:1T0Y |
X |
1K |
PMID:15364906 |
| Lytle BL, Peterson FC, Tyler EM, Vinarov DA, Markley JL, Volkman BF |
2006 |
Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family |
Acta Crystallograph Sect F Struct Biol Cryst Commun |
62(Pt 6):490-3 |
NMR |
Structural
PDB ID:2G0Q |
X |
222K |
PMID:16754964
PMCID:PMC2243094 |
| Makino S-i, Goren MA, Fox BG, Markley JL |
2010 |
Cell-free protein synthesis technology in NMR high-throughput structure determination |
Cell-Free Protein Production: Methods and Protocols, in Methods in Molecular Biology, Humana
Press |
607:127-47 |
NMR |
Method |
X |
252K |
PMID:20204854
PMCID Exempt |
| Malone TE, Madson SE, Wrobel RL, Jeon WB, Rosenberg NS, Johnson KA, Bingman CA, Smith DW, Phillips GN, Jr, Markley JL, Fox BG |
2005 |
X-ray structure of Arabidopsis At2g06050, 12-oxophytodienoate reductase isoform 3 |
Proteins |
58(1):243-5 |
X-ray |
Structural
PDB ID:1Q45 |
X |
1K |
PMID:15468319 |
| Markley JL |
2007 |
NMR-Based Structural Proteomics |
Spectral Techniques in Proteomics, Blackwell Publishing, Taylor and
Francis Ltd |
349-71 |
NMR |
Method |
X |
231 |
No PubMed ID |
| Markley JL, Aceti DJ, Bingman CA, Fox BG, Frederick RO, Makino S-I, Nichols KW, Phillips GN, Primm JG, Sahu SC, Vojtik FC, Volkman BF, Wrobel RL, Zolnai Z |
2009 |
The Center for Eukaryotic Structural Genomics |
J Struct Func Genomics |
10(2):165-79 |
All |
Method |
X |
243K |
PMID:19130299
PMCID:PMC2705709 |
| Markley JL, Bahrami A, Eghbalnia HR, Peterson FC, Tyler RC, Ulrich EL, Westler WM, Volkman BF |
2009 |
Macromolecular structure determination by NMR spectroscopy |
Structural Bioinformatics, Methods of Biochemical Analysis, 2nd edition,
Wiley-Blackwell |
(in press) |
NMR |
Method |
|
|
PMID - In Process |
| Markley JL, Ulrich EL, Westler WM, Volkman BF |
2003 |
Macromolecular structure determination by NMR spectroscopy |
Structural Bioinformatics, Methods of Biochemical Analysis, Wiley-Liss |
44(Pt 2):89-113 |
NMR |
Method |
X |
1K |
PMID:12647383 |
| McCoy JG, Arabshahi A, Bitto E, Bingman CA, Ruzicka FJ, Frey PA, Phillips GN, Jr |
2006 |
Structure and mechanism of an ADP-glucose phosphorylase from Arabidopsis thaliana |
Biochemistry |
45(10):3154-62 |
X-ray |
Structural
PDB ID:1ZWJ |
X |
21K |
PMID:16519510
PMCID:PMC2532824 |
| McCoy JG, Bailey LJ, Bitto E, Bingman CA, Aceti DJ, Fox BG, Phillips, GN, Jr |
2006 |
Structure and mechanism of mouse cysteine dioxygenase |
Proc Natl Acad Sci USA |
103(9):3084-9 |
X-ray |
Structural
PDB ID:2ATF |
X |
21K |
PMID:16492780
PMCID:PMC1413891 |
| McCoy JG, Bailey LJ, Ng YH, Bingman CA, Wrobel RL, Weber, AP, Fox BG, Phillips GN, Jr |
2009 |
Discovery of sarcosine dimethylglycine methyltransferase from Galderia sulphuraria |
Proteins |
74(2):368-77 |
X-ray |
Structural
PDB ID:2O57 |
X |
241K |
PMID:18623062
PMCID: PMC2742680 |
| McCoy JG, Bingman CA, Bitto E, Holdorf MM, Makaroff CA, Phillips GN, Jr |
2006 |
Structure of an ETHE1-like protein from Arabidopsis thaliana |
Acta Crystallogr D Biol Crystallogr |
62(Pt 9):964-70 |
X-ray |
Structural
PDB ID:2GCU |
X |
21K |
PMID:16929096 |
| McCoy JG, Bitto E, Bingman CA, Wesenberg GE, Bannen RM, Kondrashov DA, Phillips GN, Jr |
2007 |
Structure and dynamics of UDP-glucose pyrophosphorylase from Arabidopsis thaliana with bound UDP-glucose and UTP |
J Mol Biol |
366(3):830-41 |
X-ray |
Structural
PDB ID:1Z90 |
X |
222K |
PMID:17178129
PMCID:PMC1847403 |
| McCoy JG, Johnson H, Singh S, Bingman CA, Lei I-K, Thorson J, Phillips GN, Jr |
2009 |
Structural characterization of CalO2: a putative orsellinic acid P450 oxidase in the calicheamicin biosynthetic pathway |
Proteins |
74(1):50-60 |
X-ray |
Structural
PDB ID:3BUJ |
X |
241K |
PMID:18561189
PMCID:PMC2742692 |
| Moe LA, Bingman CA, Wesenberg GE, Phillips GN, Jr, Fox BG |
2006 |
Structure of T4moC, the Rieske-type ferredoxin component of toluene 4-monooxygenase |
Acta Crystallogr D Biol Crystallogr |
62(Pt 5):476-82 |
X-ray |
Structural
PDB ID:1VM9 |
X |
21K |
PMID:16627939 |
| Montelione GT, Arrowsmith C, Girvin ME, Kennedy MA, Markley JL, Powers R, Prestegard JH, Szyperski T |
2009 |
Unique opportunities for NMR methods in structural genomics |
J Struct Func Genomics |
10(2):101-106 |
NMR |
Method |
X |
244K |
PMID:19288278
PMCID:PMC2705713 |
| Nederveen AJ, Doreleijers JF, Vranken W, Miller Z, Spronk CAEM, Nabuurs SB, Guntert P, Livny M, Markley JL, Nilges M, Ulrich EL, Kaptein R,
Bonvin AMJJ |
2005 |
RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank |
Proteins |
59(4):662-72 |
BI |
Method |
X |
1K |
PMID:15822098 |
| Oldfield CJ, Ulrich EL, Cheng YG, Dunker AK, Markley JL |
2005 |
Addressing the intrinsic disorder bottleneck in structural proteomics |
Proteins |
59(3):444-53 |
BI |
Method |
X |
1K |
PMID:15789434 |
| Pan X, Wesenberg GE, Markley JL, Fox BG, Phillips GN, Jr, Bingman CA |
2007 |
A graphical approach to tracking and reporting target status in structural genomics |
J Struct Func Genomics |
8(4):209-16 |
BI |
Method |
X |
234K |
PMID:18236171 |
| Park S-Y, Fung P, Nishimura N, Jensen DR, Fujii H, Zhao Y, Lumba S, Santiago J, Rodrigues A, Chow T-F, Alfred SE, Bonetta D, Finkelstein R,
Provart NJ, Desveaux D, Rodriguez PL, McCourt P, Zhu J-K, Schroeder JI, Volkman BF, Cutler SR |
2009 |
Abscisic acid inhibits type 2C protein Phosophatases via the PYR/PYL family of START proteins |
Science |
324(5930):1012-3 |
NMR |
Method |
X |
251K |
PMID:19407142
PMCID:PMC2827199 |
| Peterson FC, Hayes PL, Waltner JK, Heisner AK, Jensen DR, Sander TL, Volkman BF |
2006 |
Structure of the SCAN domain from the tumor suppressor protein MZF1 |
J Mol Biol |
363(1):137-47 |
NMR |
Structural
PDB ID:2FI2 |
X |
21K |
PMID:16950398
PMCID:PMC1941711 |
| Peterson FC, Lytle BL, Sampath S, Vinarov DA, Tyler EM, Shahan MN, Markley JL, Volkman BF |
2005 |
Solution structure of thioredoxin h1 from Arabidopsis thaliana |
Protein Sci |
14(8):2195-200 |
NMR |
Structural
PDB ID:1XFL |
X |
1K |
PMID:15987893
PMCID:PMC2279331 |
| Phillips GN, Jr. |
2009 |
Describing protein conformational ensembles: beyond static snapshots |
F1000 Biology Reports, F1000 Biology |
1:38 |
X-ray |
Method |
X |
251 |
No PMID |
| Phillips GN, Jr, Fox BG, Markley JL, Volkman BF, Bae E, Bitto E, Bingman CA, Frederick RO, McCoy JG, Lytle BL, Pierce BS, Song J, Twigger SN |
2007 |
Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics |
J Struct Func Genomics |
8(2-3):73-84 |
All |
Structural
(numerous PDB IDs) |
X |
232K |
PMID:17786587 |
| Rayment I |
2002 |
Small-scale batch crystallization of proteins revisited: an underutilized way to grow large protein crystals |
Structure |
10(2):147-51 |
X-ray |
Method |
X |
1K |
PMID:11839300 |
| Richards MP, Aranda R, IV, He C, Phillips GN, Jr. |
2010 |
Effect of pH on structural changes in perch hemoglobin that can alter redox stability and heme affinity |
Journal of Aquatic Food Product Technology |
(in press) |
X-ray |
Structural
PDB ID:1XQ5 |
X |
252 |
PMID - In Process |
| Sabina RL, Paul AL, Ferl RJ, Laber B, Lindell SD |
2007 |
Adenine nucleotide pool perturbation is a metabolic trigger for AMP deaminase inhibitor-based herbicide toxicity |
Plant Physiol |
143(4):1252-60 |
None |
Method |
X |
231K |
PMID:17307896
PMCID:PMC1851821 |
| Schwander P, Fung R, Phillips GN, Jr, Ourmazd A |
2010 |
Mapping the conformations of biological assemblies |
New Journal of Physics |
(in press) |
X-ray |
Method |
X |
|
PMID - In Process |
| Singh S, Cornilescu CC, Tyler RC, Cornilescu G, Tonelli M, Lee MS, Markley JL |
2005 |
Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein |
Protein Sci |
14(10):2601-9 |
NMR |
Structural
PDB ID:1XO8 |
X |
221K |
PMID:16155204
PMCID:PMC2253292 |
| Singh S, Hager MH, Zhang C, Griffith BR, Lee MS, Hallenga K, Markley JL, Thorson JS |
2006 |
Structural insight into the self-sacrifice mechanism of enediyne resistance |
ACS Chem Biol |
1(7):451-60 |
NMR |
Structural
PDB ID:1ZXF |
X |
222K |
PMID:17168523 |
| Singh S, McCoy JG, Zhang C, Bingman CA, Phillips GN, Jr, Thorson JS |
2008 |
Structure and mechanism of the rebeccamycin sugar 4'-O-methyltransferase RebM |
J Biol Chem |
283(33):22628-36 |
NMR |
Structural
PDB ID:3BUS |
X |
241K |
PMID:18502766
PMCID:PMC2504894 |
| Singh S, Tonelli M, Tyler RC, Bahrami A, Lee MS, Markley JL |
2005 |
Three-dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1 |
Protein Sci |
14(8):2095-102 |
NMR |
Structural
PDB ID:1XO3 |
X |
1K |
PMID:16046629
PMCID:PMC2279321 |
| Skjeldal L, Peterson FC, Moe LA, Pikus JD, Doreleijers JF, Volkman BF, Westler WM, Markley JL, Fox BG |
2004 |
Solution structure of T4moC, the Rieske ferredoxin component of the toluene 4-monooxygenase complex |
J Inorg Biol Chem |
9(8):945-53 |
NMR |
Structural
PDB ID:1SJG |
X |
1K |
PMID:15452777 |
| Smith DW, Johnson KA, Bingman CA, Aceti DJ, Blommel PG, Wrobel RL, Frederick RO, Zhao Q, Sreenath HK, Fox BG, Volkman BF, Jeon
WB, Newman CS, Ulrich EL, Hegeman AD, Kimball TL, Thao S, Sussman MR, Markley JL, Phillips GN, Jr |
2004 |
Crystal structure of At2g03760, a putative steroid sulfotransferase from Arabidopsis thaliana |
Proteins |
57(4):854-7 |
X-ray |
Structural
PDB ID:1Q44 |
X |
1K |
PMID:15317023 |
| Sobrado P, Goren MA, James D, Amundson CK, Fox BG |
2008 |
A Protein Structure Initiative approach to expression, purification, and in situ delivery of human cytochrome b5 to
membrane vesicles |
Protein Expr Purif |
58(2):229-41 |
Cloning |
Method |
X |
243K |
PMID:18226920
PMCID:PMC2277500 |
| Song J, Bettendorff L, Tonelliu M, Markley JL |
2008 |
Structural basis for the catalytic mechanism of mammalian 25 kDa thiamine triphosphatase |
J Biol Chem |
283(16):10939-48 |
NMR |
Structural
PDB ID:2JMU |
X |
234K |
PMID:18276586
PMCID:PMC2447667 |
| Song J, Guo LW, Muradov H, Artemyev NO, Ruoho AE, Markley JL |
2008 |
Intrinsically disordered {gamma}-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and
tertiary structure |
Proc Natl Acad Sci USA |
105(5):1255-10 |
NMR |
Structural
PDB ID:2JU4 |
X |
234K |
PMID:18230733
PMCID:PMC2234174 |
| Song J, Lee MS, Carlberg I, Vener AV, Markley JL |
2006 |
Micelle-induced folding of spinach thylakoid soluble phosphoprotein of 9 kDa and its functional implications |
Biochemistry |
45(51):15633-43 |
NMR |
Structural
PDB ID:2FFT |
X |
222K |
PMID:17176085
PMCID:PMC2533273 |
| Song J, Markley JL |
2007 |
Three-dimensional structure determined for a subunit of human tRNA splicing endonuclease (Sen15) reveals a novel
dimeric fold |
J Mol Biol |
366(1):155-64 |
NMR |
Structural
PDB ID:2GW6 |
X |
223K |
PMID:17166513
PMCID:PMC1865571 |
| Song J, Markley JL |
2007 |
Cautionary tail: the presence of an N-terminal tag on dynein light-chain Roadblock/LC7 affects its interaction with
a functional partner |
Protein Pept Lett |
14(3):265-8 |
NMR |
Structural
PDB ID:1Y4O |
X |
223K |
PMID:17346231 |
| Song J, McGivern JV, Nichols KW, Markley JL, Sheets MD |
2008 |
Structural basis for RNA recognition by a type II poly(A)-binding protein |
Proc Natl Acad Sci USA |
105(40):15317-22 |
NMR |
Method |
X |
243K |
PMID:18824697
PMCID:PMC2563106 |
| Song J, Tyler RC, Lee MS, Tyler EM, Markley JL |
2005 |
Solution structure of isoform 1 of Roadblock/LC7, a light chain in the dynein complex |
J Mol Biol |
354(5):1043-51 |
NMR |
Structural
PDB ID:1Y4O |
X |
21K |
PMID:16289575 |
| Song J, Tyler RC, Wrobel RL, Frederick RO, Vojtik FC, Jeon WB, Lee MS, Markley JL |
2005 |
Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of
human thioredoxin-like protein |
Protein Sci |
14(4):1059-63 |
NMR |
Structural
PDB ID:1XOY |
X |
1K |
PMID:15741346
PMCID:PMC2253455 |
| Song J, Vinarov DA, Tyler EM, Shahan MN, Tyler RC, Markley JL |
2004 |
Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome B5 like fold |
J Biomol NMR |
30(2):215-8 |
NMR |
Structural
PDB ID:1T0G |
X |
1K |
PMID:15702529 |
| Song J, Zhao KQ, Newman CL, Vinarov DA, Markley JL |
2007 |
Solution structure of human sorting nexin 22 |
Protein Sci |
16(5):807-14 |
NMR |
Structural
PDB ID:2ETT |
X |
231K |
PMID:17400918
PMCID:PMC2206652 |
| Song J, Zhao Q, Lee MS, Markley JL |
2005 |
1H, 15N, and 13C resonance assignments of the putative Bet v 1 family
protein At1g24000.1 from Arabidopsis thaliana |
J Biomol NMR |
32(4):335 |
NMR |
Structural
PDB ID:1VJH |
X |
21K |
PMID:16211487 |
| Song J, Zhao Q, Thao S, Frederick RO, Markley JL |
2004 |
Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana |
J Biomol NMR |
30(4):451-6 |
NMR |
Structural
PDB ID:1TIZ |
X |
1K |
PMID:15630565 |
| Sreenath HK, Bingman CA, Buchan BW, Seder KD, Burns BT, Geetha HV, Jeon WB, Vojtik FC, Aceti DJ,
Frederick RO, Phillips GN, Jr, Fox BG |
2005 |
Protocols for production of selenomethionine-labeled proteins in 2-L polyethylene terephthalate
bottles using auto-induction medium |
Protein Expr Purif |
40(2):256-67 |
PP |
Method |
X |
1K |
PMID:15766867 |
| Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Hegeman AD, Nelson C, Rancou D, Bednarek S,
Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, Phillips GN, Jr, Markley JL, Sussman MR |
2005 |
Identification of transcribed sequences in Arabidopsis thaliana using high-resolution genome
tiling arrays |
Proc Natl Acad Sci USA |
102(12):4453-8 |
Cloning |
Method |
X |
1K |
PMID:15755812
PMCID:PMC555476 |
| Sugimori N, Torizawa T, Aceti DJ, Thao S, Markley JL, Kainosho M |
2004 |
1H, 13C, and 15N backbone assignment of a 32 kDa hypothetical protein
from Arabidopsis thaliana At3g16450.1 |
J Biomol NMR |
30(3):357-8 |
NMR |
Structural
PDB ID:2JZ4 |
X |
1K |
PMID:15756462 |
| Takeda M, Sugimori N, Torizawa T, Terauchi T, Ono AM, Yagi H, Yamaguchi Y, Kato K, Ikeya T, Jee J,
Gantert P, Aceti DJ, Markley JL, Kainosho M |
2008 |
Structure of the putative 32 kDa myrosinase-binding protein from Arabidopsis (At3g16450.1)
determined by SAIL-NMR |
FEBS J |
275(23):5873-84 |
NMR |
Structural
PDB ID:2JZ4 |
X |
243K |
PMID:19021763
PMCID:PMC2702212 |
| Thao S, Zhao Q, Kimball T, Steffen E, Blommel PG, Riters M, Newman CS, Fox BG, Wrobel RL |
2004 |
Results from high-throughput DNA cloning of Arabidopsis thaliana target genes using
site-specific recombination |
J Struct Func Genomics |
5(4):267-76 |
Cloning |
Method |
X |
1K |
PMID:15750721 |
| Torizawa T, Shimizua M, Taoka M, Miyano H, Kainosho M |
2004 |
Efficient production of isotopically labeled proteins by cell-free synthesis: a practical protocol |
J Biomol NMR |
30(3):311-25 |
PP |
Method |
X |
1K |
PMID:15754057 |
| Tyler RC, Aceti DJ, Bingman CA, Cornilescu CC, Fox BG, Frederick RO, Jeon WB, Lee MS, Newman CS,
Peterson FC, Phillips GN, Jr, Shahan MN, Singh S, Song J, Sreenath HK, Tyler EM, Ulrich EL, Vinarov DA, Vojtik FC, Volkman BF, Wrobel RL,
Zhao Q, Markley JL |
2005 |
Comparison of cell-based and cell-free protocols for producing target proteins from Arabidopsis
thaliana for structural studies |
Proteins |
59(3):633-43 |
PP |
Method |
X |
1K |
PMID:15789406 |
| Tyler RC, Bitto E, Berndsen CE, Bingman CA, Singh S, Lee MS, Wesenberg GE, Denu JM, Phillips GN,
Jr, Markley JL |
2006 |
Structure of Arabidopsis thaliana At1g77540 protein, a minimal acetyltransferase from the
COG2388 family |
Biochemistry |
45(48):14325-36 |
NMR |
Structural
PDB ID:1XMT |
X |
222K |
PMID:17128971
PMCID:PMC2533278 |
| Tyler RC, Sreenath HK, Aceti DJ, Bingman CA, Singh S, Markley JL, Fox BG |
2005 |
Auto-induction medium for the production of [U-15N] and [U-13C, U-15N]-labeled
proteins for NMR screening and structure determination |
Protein Expr Purif |
40(2):268-78 |
NMR |
Method |
X |
1K |
PMID:15766868 |
| Vinarov DA, Lytle BL, Peterson FC, Tyler EM, Volkman BF, Markley JL |
2004 |
Cell-free protein production and labeling protocol for NMR-based structural proteomics |
Nat Methods |
1(2):149-53 |
PP |
Method |
X |
1K |
PMID:15782178 |
| Vinarov DA, Markley JL |
2005 |
High-throughput automated platform for nuclear magnetic resonance-based structural proteomics |
Expert Rev Proteomics |
2(1):49-55 |
PP |
Method |
X |
1K |
PMID:15966852 |
| Vinarov DA, Newman CL, Markley JL |
2006 |
Wheat germ cell-free platform for eukaryotic protein production |
FEBS J |
273(18):4160-9 |
PP |
Method |
X |
223K |
PMID:16930128 |
| Vinarov DA, Newman CL, Tyler EM, Markley JL, Shahan MN |
2006 |
Wheat germ cell-free expression system for protein production |
Current Protocols in Protein Science,
Wiley Interscience |
|
PP |
Method |
X |
224K |
PMID:18429309 |
| Waltner JK, Lytle BL, Sampath S, Vinarov DA, Tyler EM, Shahan MN, Markley JL, Volkman BF |
2005 |
Structure of the B3 domain from Arabidopsis thaliana protein At1g16640 |
Protein Sci |
14(9):2478-83 |
NMR |
Structural
PDB ID:1YEL |
X |
1K |
PMID:16081658
PMCID:PMC2253459 |
| Wang L, Eghbalnia HR, Bahrami A, Markley JL |
2005 |
Linear analysis of carbon-13 chemical shift differences and its application to the detection
and correction of errors in referencing and spin system identifications |
J Biomol NMR |
32(1):13-22 |
NMR |
Method |
X |
1K |
PMID:16041479 |
| Wang L, Eghbalnia HR, Markley JL |
2006 |
Probabilistic approach to determining unbiased random-coil carbon-13 chemical shift values
from the protein chemical shift database |
J Biomol NMR |
35(3):155-65 |
NMR |
Method |
X |
21K |
PMID:16799859 |
| Wang L, Eghbalnia HR, Markley JL |
2007 |
Nearest-neighbor effects on backbone alpha and beta carbon chemical shifts in proteins |
J Biomol NMR |
39(3):247-57 |
NMR |
Method |
X |
232K |
PMID:17899393 |
| Wang L, Markley JL |
2009 |
Empirical correlation between protein backbone 15N and 13C secondary
chemical shifts and its application to nitrogen chemical shift re-referencing |
J Biomol NMR |
44(2):95-9 |
NMR |
Method |
X |
251K |
PMID:19436955
PMCID:PMC2782637 |
| Wrobel RL, Bingman CA, Jeon WB, Song J, Vinarov DA, Frederick RO, Aceti DJ, Sreenath HK,
Zolnai Z, Vojtik FC, Bitto E, Fox BG, Phillips GN, Jr, Markley JL |
2006 |
Structural Proteomics |
Plant Proteomics, Annual Plant Reviews,
Blackwell Publishing |
99-128 |
All |
Method |
X |
22K |
No PMID |
| Zhang C, Bitto E, Goff RD, Singh S, Bingman CA, Griffith BR, Alberman C, Phillips GN, Jr,
Thorson JS |
2008 |
Biochemical and structural insights of the early glycosylation steps in calicheamicin
biosnythesis |
Chem and Bio |
15(8):842-53 |
X-ray |
Structural
PDB ID:3D0Q,
PDB ID:3D0R |
X |
241K |
PMID:18721755
PMC Journal - In Process
|
| Zhao Q, Chae YK, Markley JL |
2002 |
NMR solution structure of ATTp, an Arabidopsis thaliana trypsin inhibitor |
Biochemistry |
41(41):12284-96 |
NMR |
Structural
PDB ID:1JXC |
X |
1K |
PMID:12369816 |
| Zhao Q, Frederick RO, Seder KD, Thao S, Sreenath HK, Peterson FC, Volkman BF, Markley JL,
Fox BG |
2004 |
Production in two-liter beverage bottles of proteins for NMR structure determination
labeled with either 15N- or 13C;15N |
J Struct Func Genomics |
5(1-2):87-93 |
NMR |
Method |
X |
1K |
PMID:15263847 |
| Zolnai Z, Lee PT, Li J, Chapman MR, Newman CS, Phillips GN, Jr, Rayment I, Ulrich EL,
Volkman BF, Markley JL |
2003 |
Project management system for structural and functional proteomics: Sesame |
J Struct Func Genomics |
4(1):11-23 |
Sesame |
Method |
X |
1K |
PMID:12943363 |